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[http://psort.nibb.ac.jp]
[http://www.cbs.dtu.dk/services/NetNES]
Page 2
Factors
H. sapiens
S. cerevisiae
P. falciparum
Nuclear signals prediction
Expression pattern
NLS
NES
Micro-array
Proteomic data
TFIIA α
P52655
P32773 (TOA1)
MAL7P1.78 +
-
-
G
-
TFIIA β
TFIIA γ
P52657
P32774 (TOA2)
PFL2435w *+
-
-
T,Sc
-
PFI1630 *
+
-
G
-
TFIIB
Q00403
P29055
PFA0525w
-
-
All stages
-
TFIID TBP
P20226
P13393
PFE0305w
-
-
R
-
TFIID TAF1
P21675 (TAF250)
P46677 (TAF145)
PFL1645w
+
-
S,LT
S,G
TFIID TAF2
gi:4507347 (TAF150)
P23255 (TAF150)
MAL7P1.134
+
+
R,T
S
TFIID TAF5
Q15542 (TAF100)
P38129 (TAF90)
?
TFIID TAF7
Q15545 (TAF55)
Q05021 (TAF67)
PFI1425w
+
+
R,S
-
TFIID TAF14
P42568 (ENL/AF-9)
P35189 (TAF30)
?
TFIID TAF4
O00268 (TAF135)
P50105 (TAF48)
?
TFIID TAF12
Q16514 (TAF20)
Q03761 (TAF68/61)
?
TFIID TAF6
P49848 (TAF80)
P53040 (TAF60)
?
TFIID TAF9
Q16594 (TAF31)
Q05027 (TAF17)
?
TFIID TAF11
Q15544 (TAF28)
Q04226 (TAF40)
?
TFIID TAF13
Q15543 (TAF18)
P11747 (TAF19)
?
TFIID TAF3
gi:13374079 (TAF140)
Q12297 (TAF47)
?
TFIID TAF8
gi:31323620 (TAF43)
Q03750 (TAF65)
?
TFIID TAF10
Q12962 (TAF30)
Q12030 (TAF25)
PFE1110w
-
+
R, Sc
-
TFIIE α
P29083
P36100
MAL7P1.86 +
+
+
Sc
-
TFIIE β
P29084
P36145
MAL13P1.360 *
+
-
ND
-
TFIIF α
P35269 (RAP74)
P41895 (Tfg1)
?
TFIIF β
P13984 (RAP30)
P41896(Tfg2)
PF11_0458 *
-
+
R,G
-
TFIIH core p62/TFB1
P32780 (p62)
P32776 (TFB1)
MAL3P7.42 *+ (Chr3.phat_258)
+
+
R,T
-
TFIIH core p52/TFB2
Q92759 (p52)
gi:6325135 (TFB2)
PFL2125c
+
+
R,T,Sc
-
TFIIH core p44/SSL1
Q13888 (p44)
Q04673 (SSL1)
MAL13P1.76
+
+
R,T
-
TFIIH core p34/TFB4
Q13889 (p34)
Gi:6325313
PF13_0279
-
+
T
-
TFIIH core TFB5
Gi:55665883
Gi:13129164
PF14_0398
-
-
R, T, G
-
TFIIH core XPB/SSL2-RAD25
P19447 (XPB)
Q00578 (SSL2/RAD25)
PF10_0369
+
-
G
S
TFIIH XPD/RAD3
P18074 (XPD)
P06839 (RAD3)
PFI1650w
+
+
R,T,G
G
TFIIH CAK MAT1/TFB3
P51948 (MAT1)
Gi:6320668 (TFB3)
PFE0610c
+
-
R,T
-
TFIIH CAK Cdk7/KIN28
P50613 (CDK7)
P06242 (KIN28)
? $
TFIIH CAK Cyclin H/CCL1
P51946 (cyclin H)
P37366 (CCL1)
? $
The general transcription factors which were identified in this report are underlined and shown in bold; * and + indicate similarities which were identified in this report after assessing PSI-BLAST marginal similarities at the sequence 2D level or after extending the comparison at the 2D level outside the limits primarily defined by PSI-BLAST, respectively. The Swiss-Prot accession numbers are given for the human and yeast sequences. When a Swiss-Prot identifier is not available, the genbank identifier (gi) is indicated in italics instead. The references of the human TAF3 and TAF8 sequences can be found in [50] and [100], respectively. $ : see text for comments on these putative homologues of Cdk7/KIN28 and cyclin H/CCL1. The presence of nuclear localization sequences (NLS 102), nuclear export sequences (NES [103]), and the expression of these predicted general transcription factors using microarray and proteomics on different parasite stages ([9–11, 89]) are indicated. G: gametocyte, T: trophozoite, LT: late trophozoite, Sc: schizonte, R: ring, (-): absent, (+): present, (?): cannot be found.
